It really depends on how much of the fins and tail were eaten by the disease. It would have had to have eaten into the blood vessels to have any scabbing. If you think it has, then it's a normal part of the healing process. If not, if the "scabbing" is occurring more than 2mm away from the closest blood vessels, then something else may be going on. I must caution you though, much of what you just described TB (see below), and goldfish (being part of the carp family) are particularly susceptable to TB.
IF TB is not the issue, then I would recommend treating with .15ppm copper suflate and .15ppm citric acid (helps copper dissolve and for levels to remain steady). These levels can be fairly accurately achieved by mixing 21 grams of each with 1 pint of distilled water, then adding 1 drop of the solution per gallon of tank water (or hospital tank water). If your tank doesn't have any live plants in it, then I would also recommend treating the main tank with the same copper sulfate treatment, then doing weekly 20% water changes for 6-8 weeks without repeating the treatment.
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I would also recommend careful attention to touching the water with any open cuts or sores on your hands or arms. Fin Rot can be a sign of TB which can infect you through open cuts or sores and for which there is no cure (causes skin TB in humans). PLEASE read up on TB before continuing. You can read up on it at: http://aquatopiaforum.com/index.php?showtopic=108 :star:
Good luck and keep us posted.